Module vcf_rider::indel

Module needed to correctly manage indels when computing scores. Indels represent a problem because they make genomes of different individuals 'out of phase' and force us to divide them in different groups.

Re-exports

use super::mutations;

use std::collections::VecDeque;

use std::collections::HashMap;

Structs

IndelRider

Enums

MutationClass

Used to classify indels and snps in groups: SNPs will be tagged as "Manage" while indels with Ins or Del (if this group has their alternative allele). String (Vec) is the sequence that needs to be inserted for ins, usize is the coord inside the window and u64 the length of deletions.